primate-mtDNA-models

Best AIC Models from jModeltest

primate-fast.nex

number of sequences: 12
number of sites: 436

Model selected:
   Model = HKY+I+G
   partition = 010010

BEGIN PAUP;
Lset base=(0.4023 0.3347 0.0642 0.1988) nst=2 tratio=9.3598 rates=gamma shape=0.8510 ncat=4 pinvar=0.2250;
END;

primate-slow.nex

  number of sequences: 12
  number of sites: 462

Model selected:
   Model = TPM2uf+G
   partition = 010212

BEGIN PAUP;
Lset base=(0.2976 0.2905 0.1233 0.2887) nst=6  rmat=(2.8149 13.5843 2.8149 1.0000 13.5843 1.0000) rates=gamma shape=0.5020 ncat=4 pinvar=0;
END;

primate-3rdpos.nex

number of sequences: 12
number of sites: 231

Model selected:
Model = TrN
partition = 010020

BEGIN PAUP;
Lset base=(0.3710 0.4071 0.0414 0.1806) nst=6 rmat=(1.0000 175.0864 1.0000 1.0000 62.4439 1.0000) rates=equal pinvar=0;
END;

primate-noncoding.nex

  Fixed BIONJ-JC

number of sequences: 12
  number of sites: 205

 Model selected:
   Model = TIM2+G
   partition = 010232

BEGIN PAUP;
Lset base=(0.3783 0.2038 0.1513 0.2666) nst=6  rmat=(2.9347 15.3089 2.9347 1.0000 36.3500 1.0000) rates=gamma shape=0.3040 ncat=4 pinvar=0;
END;